| 1 | 20,492 | 42,533 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 21,020 | 14,329 | bindeps | binary dependency management for ruby gems |
| 3 | 28,140 | 16,768 | crb-blast | See summary |
| 4 | 39,674 | 18,300 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 51,732 | 55,182 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 52,038 | 42,533 | transfuse | See summary |
| 7 | 53,672 | 24,061 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 54,392 | 87,723 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 9 | 137,976 | 87,723 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 159,193 | 87,723 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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