| 1 | 11,072 | 8,905 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 17,451 | 27,093 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 18,160 | 25,730 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 18,884 | 32,719 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 20,915 | 13,156 | tap | A configurable, distributable workflow framework. |
| 6 | 23,951 | 66,833 | RSRuby | An R to Ruby bridge |
| 7 | 24,232 | 15,476 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 8 | 24,485 | 23,432 | ms-core | basic, shared functionality for mspire libraries. |
| 9 | 24,585 | 27,093 | config_parser | Parse command-line options into a configuration hash |
| 10 | 29,041 | 30,587 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 33,946 | 20,813 | tap-gen | Generators for Tap |
| 12 | 35,235 | 30,587 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 39,526 | 41,793 | rap | A rakish extension to tap. |
| 14 | 39,806 | 20,813 | tap-http | A task library for submitting http requests using Tap. |
| 15 | 43,573 | 23,432 | tap-server | A web interface for tap. |
| 16 | 43,750 | 24,518 | tap-test | Test modules for Tap |
| 17 | 47,117 | 58,247 | ms-fasta | provides programmatic access to fasta files |
| 18 | 48,985 | 35,268 | tap-tasks | A set of standard Tap tasks |
| 19 | 49,325 | 46,216 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 50,127 | 51,612 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 51,976 | 38,290 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 58,603 | 66,833 | gemdev | Making gem development a bit easier. |
| 23 | 60,638 | 78,093 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 61,544 | 38,290 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 63,909 | 35,268 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 68,860 | 51,612 | external | array-like access to external data files |
| 27 | 72,761 | 46,216 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 73,920 | 66,833 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 76,272 | 32,719 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 76,730 | 46,216 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 77,239 | 58,247 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 80,925 | 145,948 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 93,364 | 116,310 | ms-uniprot | ms-uniprot |
| 34 | 95,979 | 78,093 | sample_tasks | Sample Tap Tasks |
| 35 | 100,783 | 66,833 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 111,576 | 93,924 | arrayio | Array-like behavior for archival files. |
| 37 | 113,555 | 145,948 | root | This rubygem does not have a description or summary. |
| 38 | 113,831 | 78,093 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 119,461 | 116,310 | data_graph | This rubygem does not have a description or summary. |
| 40 | 121,935 | 116,310 | goactive | ActiveRecord models for GO. |
| 41 | 126,048 | 116,310 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 127,026 | 116,310 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 128,086 | 93,924 | toe | A tap development suite |
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