| 1 | 11,056 | 10,310 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 17,390 | 19,673 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 18,114 | 23,194 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 18,830 | 37,202 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 20,920 | 16,487 | tap | A configurable, distributable workflow framework. |
| 6 | 23,813 | 90,788 | RSRuby | An R to Ruby bridge |
| 7 | 24,199 | 18,167 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 8 | 24,463 | 27,394 | ms-core | basic, shared functionality for mspire libraries. |
| 9 | 24,526 | 14,853 | config_parser | Parse command-line options into a configuration hash |
| 10 | 29,026 | 24,078 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 33,902 | 37,202 | tap-gen | Generators for Tap |
| 12 | 35,048 | 113,782 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 39,459 | 49,198 | rap | A rakish extension to tap. |
| 14 | 39,819 | 43,762 | tap-http | A task library for submitting http requests using Tap. |
| 15 | 43,597 | 39,186 | tap-server | A web interface for tap. |
| 16 | 43,765 | 43,762 | tap-test | Test modules for Tap |
| 17 | 47,028 | 64,278 | ms-fasta | provides programmatic access to fasta files |
| 18 | 48,937 | 55,740 | tap-tasks | A set of standard Tap tasks |
| 19 | 49,365 | 49,198 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 49,857 | 82,265 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 51,958 | 55,740 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 58,461 | 69,506 | gemdev | Making gem development a bit easier. |
| 23 | 60,473 | 59,807 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 61,545 | 69,506 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 63,947 | 75,360 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 68,797 | 64,278 | external | array-like access to external data files |
| 27 | 72,644 | 90,788 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 73,839 | 75,360 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 76,305 | 59,807 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 76,637 | 90,788 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 77,197 | 82,265 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 80,417 | 131,986 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 93,188 | 90,788 | ms-uniprot | ms-uniprot |
| 34 | 95,509 | 131,986 | sample_tasks | Sample Tap Tasks |
| 35 | 100,826 | 82,265 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 111,227 | 113,782 | arrayio | Array-like behavior for archival files. |
| 37 | 113,247 | 153,037 | root | This rubygem does not have a description or summary. |
| 38 | 113,519 | 113,782 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 119,030 | 113,782 | data_graph | This rubygem does not have a description or summary. |
| 40 | 121,642 | 131,986 | goactive | ActiveRecord models for GO. |
| 41 | 125,901 | 113,782 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 126,434 | 153,037 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 127,973 | 113,782 | toe | A tap development suite |
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