| 1 | 19,629 | 12,655 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,759 | 101,266 | bindeps | binary dependency management for ruby gems |
| 3 | 27,342 | 29,049 | crb-blast | See summary |
| 4 | 38,073 | 116,145 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,724 | 35,633 | transfuse | See summary |
| 6 | 51,935 | 101,266 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 7 | 52,403 | 116,145 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 62,957 | 61,698 | fixwhich | Just the which gem with file permissions fixed |
| 9 | 133,750 | 89,232 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 155,814 | 116,145 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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