| 1 | 18,609 | 13,269 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 19,788 | 36,317 | bindeps | binary dependency management for ruby gems |
| 3 | 26,245 | 36,317 | crb-blast | See summary |
| 4 | 36,599 | 141,617 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,166 | 33,504 | transfuse | See summary |
| 6 | 50,355 | 141,617 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 7 | 51,045 | 141,617 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 62,272 | 29,333 | fixwhich | Just the which gem with file permissions fixed |
| 9 | 131,194 | 141,617 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 153,054 | 101,388 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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