| 1 | 13,811 | 94,717 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 18,276 | 36,338 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 19,261 | 15,260 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,318 | 16,073 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 46,160 | 55,558 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 48,835 | 23,705 | rya | My personal library |
| 7 | 62,961 | 26,378 | abort_if | Easy error logging and assertions.. |
| 8 | 67,659 | 41,906 | pasv_lib | Library code for PASV |
| 9 | 72,713 | 41,906 | matr | Deal text file matrices. |
| 10 | 74,617 | 22,194 | big_simon | Viral host discovery pipeline. |
| 11 | 81,444 | 63,493 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 93,917 | 24,314 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 99,116 | 73,587 | shaq_lib | Library code for Shaq assembler |
| 14 | 113,245 | 86,482 | nr_test | test |
| 15 | 125,135 | 68,264 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 125,794 | 94,717 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 154,394 | 59,263 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 161,424 | 73,587 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 165,578 | 94,717 | zeta_hunter | Library code for ZetaHunter. |
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