Mooreryan's Gems

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#Total RankDaily RankNameSummary
114,81624,775shannonSimple gem to calculate Shannon entropy.
217,36069,238parse_fastaProvides nice, programmatic access to fasta and fastq files, as well as providing Seque...
318,33169,238irokiCommand line app and library code for Iroki, a phylogenetic tree customization program.
433,45420,457aaiCalculate Seanie's amino acid similarity score between multiple genomes/bins.
546,05851,580tree_clustersSnazzy code for working with each cluster in a tree.
648,83669,238ryaMy personal library
762,22933,989abort_ifEasy error logging and assertions..
867,17069,238pasv_libLibrary code for PASV
972,31228,333matrDeal text file matrices.
1075,46728,333big_simonViral host discovery pipeline.
1179,63869,238stat_cFast, well documented C stats extension for Ruby.
1295,64233,989coutinho_assemblyRun Coutinho's assembly pipeline.
1397,66669,238shaq_libLibrary code for Shaq assembler
14113,08369,238nr_testtest
15124,34369,238lsaLatent semantic analysis pipeline for genomes and metagenomes
16124,72969,238windMy personal Ruby core extensions including a super fast buffered version of each_line.
17152,51369,238iroki_libLibrary code for Iroki, a phylogenetic tree customization program.
18158,97243,643blosumCommon substitution matrices for sequence alignment.
19163,08569,238zeta_hunterLibrary code for ZetaHunter.