| 1 | 13,950 | 52,160 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 18,347 | 16,640 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 19,261 | 14,845 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,229 | 36,438 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 45,889 | 39,116 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 48,221 | 25,844 | rya | My personal library |
| 7 | 62,665 | 75,970 | abort_if | Easy error logging and assertions.. |
| 8 | 67,202 | 36,438 | pasv_lib | Library code for PASV |
| 9 | 72,352 | 52,160 | matr | Deal text file matrices. |
| 10 | 74,493 | 87,989 | big_simon | Viral host discovery pipeline. |
| 11 | 81,942 | 165,649 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 92,843 | 57,388 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 98,705 | 87,989 | shaq_lib | Library code for Shaq assembler |
| 14 | 112,803 | 81,475 | nr_test | test |
| 15 | 124,615 | 87,989 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 125,647 | 128,321 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 153,770 | 128,321 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 161,985 | 147,664 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 166,043 | 180,609 | zeta_hunter | Library code for ZetaHunter. |
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