| 1 | 10,573 | 7,893 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 16,651 | 33,893 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 17,335 | 11,682 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 17,980 | 33,893 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 20,214 | 61,367 | tap | A configurable, distributable workflow framework. |
| 6 | 22,607 | 61,367 | RSRuby | An R to Ruby bridge |
| 7 | 23,468 | 41,086 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 8 | 23,698 | 14,205 | ms-core | basic, shared functionality for mspire libraries. |
| 9 | 23,799 | 41,086 | config_parser | Parse command-line options into a configuration hash |
| 10 | 28,111 | 16,044 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 32,897 | 61,367 | tap-gen | Generators for Tap |
| 12 | 34,282 | 16,657 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 38,224 | 61,367 | rap | A rakish extension to tap. |
| 14 | 38,950 | 61,367 | tap-http | A task library for submitting http requests using Tap. |
| 15 | 42,652 | 61,367 | tap-server | A web interface for tap. |
| 16 | 42,830 | 61,367 | tap-test | Test modules for Tap |
| 17 | 45,947 | 21,627 | ms-fasta | provides programmatic access to fasta files |
| 18 | 47,883 | 41,086 | tap-tasks | A set of standard Tap tasks |
| 19 | 48,444 | 61,367 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 49,809 | 13,858 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 50,957 | 61,367 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 57,281 | 61,367 | gemdev | Making gem development a bit easier. |
| 23 | 59,098 | 61,367 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 60,562 | 25,716 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 62,845 | 61,367 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 67,505 | 61,367 | external | array-like access to external data files |
| 27 | 71,688 | 29,456 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 72,552 | 29,456 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 75,315 | 61,367 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 75,568 | 61,367 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 76,104 | 61,367 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 78,264 | 61,367 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 91,713 | 33,893 | ms-uniprot | ms-uniprot |
| 34 | 93,751 | 61,367 | sample_tasks | Sample Tap Tasks |
| 35 | 100,169 | 61,367 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 110,065 | 61,367 | arrayio | Array-like behavior for archival files. |
| 37 | 111,705 | 61,367 | gitgo | Issues, comments, and a wiki for git projects. |
| 38 | 111,721 | 61,367 | root | This rubygem does not have a description or summary. |
| 39 | 117,739 | 61,367 | data_graph | This rubygem does not have a description or summary. |
| 40 | 120,174 | 61,367 | goactive | ActiveRecord models for GO. |
| 41 | 124,253 | 41,086 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 125,148 | 61,367 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 126,595 | 61,367 | toe | A tap development suite |
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