| 1 | 11,183 | 18,671 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 17,733 | 14,882 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 18,372 | 26,816 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 19,224 | 19,512 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 21,174 | 51,903 | tap | A configurable, distributable workflow framework. |
| 6 | 24,329 | 15,494 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 7 | 24,407 | 62,541 | RSRuby | An R to Ruby bridge |
| 8 | 24,741 | 35,610 | ms-core | basic, shared functionality for mspire libraries. |
| 9 | 24,762 | 15,292 | config_parser | Parse command-line options into a configuration hash |
| 10 | 29,201 | 51,903 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 34,251 | 51,903 | tap-gen | Generators for Tap |
| 12 | 35,341 | 44,591 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 39,897 | 62,541 | tap-http | A task library for submitting http requests using Tap. |
| 14 | 40,048 | 26,816 | rap | A rakish extension to tap. |
| 15 | 43,762 | 80,119 | tap-server | A web interface for tap. |
| 16 | 43,917 | 80,119 | tap-test | Test modules for Tap |
| 17 | 47,435 | 80,119 | ms-fasta | provides programmatic access to fasta files |
| 18 | 49,361 | 80,119 | tap-tasks | A set of standard Tap tasks |
| 19 | 49,404 | 80,119 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 50,738 | 80,119 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 52,190 | 62,541 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 58,873 | 62,541 | gemdev | Making gem development a bit easier. |
| 23 | 61,284 | 113,432 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 61,377 | 80,119 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 63,968 | 44,591 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 69,180 | 80,119 | external | array-like access to external data files |
| 27 | 73,055 | 62,541 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 74,373 | 80,119 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 76,282 | 62,541 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 77,118 | 179,690 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 77,361 | 62,541 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 81,663 | 113,432 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 94,204 | 113,432 | ms-uniprot | ms-uniprot |
| 34 | 96,864 | 62,541 | sample_tasks | Sample Tap Tasks |
| 35 | 100,243 | 62,541 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 112,124 | 113,432 | arrayio | Array-like behavior for archival files. |
| 37 | 113,916 | 51,903 | root | This rubygem does not have a description or summary. |
| 38 | 114,253 | 80,119 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 119,869 | 113,432 | data_graph | This rubygem does not have a description or summary. |
| 40 | 122,670 | 179,690 | goactive | ActiveRecord models for GO. |
| 41 | 126,483 | 113,432 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 127,716 | 113,432 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 128,456 | 113,432 | toe | A tap development suite |
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