| 1 | 11,113 | 8,312 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 17,582 | 38,688 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 18,257 | 26,117 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 19,017 | 26,117 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 21,025 | 19,643 | tap | A configurable, distributable workflow framework. |
| 6 | 24,142 | 20,295 | RSRuby | An R to Ruby bridge |
| 7 | 24,305 | 17,505 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 8 | 24,582 | 18,487 | ms-core | basic, shared functionality for mspire libraries. |
| 9 | 24,690 | 18,487 | config_parser | Parse command-line options into a configuration hash |
| 10 | 29,142 | 21,905 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 34,093 | 35,739 | tap-gen | Generators for Tap |
| 12 | 35,283 | 19,643 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 39,779 | 79,877 | rap | A rakish extension to tap. |
| 14 | 39,822 | 26,117 | tap-http | A task library for submitting http requests using Tap. |
| 15 | 43,637 | 38,688 | tap-server | A web interface for tap. |
| 16 | 43,800 | 33,190 | tap-test | Test modules for Tap |
| 17 | 47,289 | 58,324 | ms-fasta | provides programmatic access to fasta files |
| 18 | 49,177 | 79,877 | tap-tasks | A set of standard Tap tasks |
| 19 | 49,326 | 31,137 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 50,341 | 46,450 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 52,051 | 46,450 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 58,707 | 38,688 | gemdev | Making gem development a bit easier. |
| 23 | 60,974 | 121,583 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 61,474 | 24,855 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 63,944 | 35,739 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 68,966 | 38,688 | external | array-like access to external data files |
| 27 | 72,901 | 51,640 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 74,112 | 46,450 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 76,227 | 46,450 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 76,982 | 58,324 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 77,276 | 97,109 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 81,155 | 79,877 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 93,843 | 58,324 | ms-uniprot | ms-uniprot |
| 34 | 96,460 | 163,377 | sample_tasks | Sample Tap Tasks |
| 35 | 100,527 | 58,324 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 111,800 | 51,640 | arrayio | Array-like behavior for archival files. |
| 37 | 113,832 | 79,877 | root | This rubygem does not have a description or summary. |
| 38 | 114,009 | 67,446 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 119,679 | 67,446 | data_graph | This rubygem does not have a description or summary. |
| 40 | 122,280 | 79,877 | goactive | ActiveRecord models for GO. |
| 41 | 126,198 | 67,446 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 127,400 | 79,877 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 128,256 | 58,324 | toe | A tap development suite |
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