| 1 | 11,759 | 35,210 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 18,724 | 22,722 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 19,417 | 105,941 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 20,310 | 21,079 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 21,933 | 28,404 | tap | A configurable, distributable workflow framework. |
| 6 | 25,035 | 28,404 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 7 | 25,315 | 26,624 | config_parser | Parse command-line options into a configuration hash |
| 8 | 25,854 | 57,584 | ms-core | basic, shared functionality for mspire libraries. |
| 9 | 26,012 | 57,584 | RSRuby | An R to Ruby bridge |
| 10 | 30,480 | 20,617 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 35,751 | 105,941 | tap-gen | Generators for Tap |
| 12 | 36,863 | 105,941 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 41,567 | 105,941 | tap-http | A task library for submitting http requests using Tap. |
| 14 | 41,676 | 105,941 | rap | A rakish extension to tap. |
| 15 | 44,883 | 57,584 | tap-test | Test modules for Tap |
| 16 | 45,434 | 105,941 | tap-server | A web interface for tap. |
| 17 | 49,148 | 105,941 | ms-fasta | provides programmatic access to fasta files |
| 18 | 51,200 | 105,941 | tap-tasks | A set of standard Tap tasks |
| 19 | 51,262 | 105,941 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 52,513 | 57,584 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 53,922 | 105,941 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 61,098 | 105,941 | gemdev | Making gem development a bit easier. |
| 23 | 63,157 | 105,941 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 63,465 | 105,941 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 66,110 | 41,879 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 71,506 | 31,092 | external | array-like access to external data files |
| 27 | 75,214 | 105,941 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 76,908 | 105,941 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 78,778 | 105,941 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 79,630 | 105,941 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 79,871 | 105,941 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 84,868 | 57,584 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 97,170 | 105,941 | ms-uniprot | ms-uniprot |
| 34 | 99,591 | 105,941 | sample_tasks | Sample Tap Tasks |
| 35 | 102,335 | 57,584 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 115,430 | 57,584 | arrayio | Array-like behavior for archival files. |
| 37 | 117,070 | 57,584 | root | This rubygem does not have a description or summary. |
| 38 | 117,671 | 105,941 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 123,227 | 35,210 | data_graph | This rubygem does not have a description or summary. |
| 40 | 126,325 | 105,941 | goactive | ActiveRecord models for GO. |
| 41 | 130,343 | 105,941 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 131,571 | 105,941 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 132,244 | 105,941 | toe | A tap development suite |
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