| 1 | 11,348 | 12,431 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 18,032 | 77,799 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 18,711 | 48,941 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 19,631 | 48,941 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 21,531 | 31,625 | tap | A configurable, distributable workflow framework. |
| 6 | 24,627 | 60,252 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 7 | 24,975 | 106,871 | RSRuby | An R to Ruby bridge |
| 8 | 25,076 | 48,941 | config_parser | Parse command-line options into a configuration hash |
| 9 | 25,156 | 151,100 | ms-core | basic, shared functionality for mspire libraries. |
| 10 | 29,629 | 60,252 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 34,738 | 77,799 | tap-gen | Generators for Tap |
| 12 | 35,837 | 77,799 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 40,465 | 106,871 | tap-http | A task library for submitting http requests using Tap. |
| 14 | 40,580 | 77,799 | rap | A rakish extension to tap. |
| 15 | 44,316 | 60,252 | tap-server | A web interface for tap. |
| 16 | 44,413 | 60,252 | tap-test | Test modules for Tap |
| 17 | 47,947 | 77,799 | ms-fasta | provides programmatic access to fasta files |
| 18 | 49,979 | 60,252 | tap-tasks | A set of standard Tap tasks |
| 19 | 49,980 | 151,100 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 51,528 | 151,100 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 52,698 | 60,252 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 59,548 | 151,100 | gemdev | Making gem development a bit easier. |
| 23 | 61,932 | 41,075 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 62,002 | 60,252 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 64,603 | 77,799 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 69,842 | 106,871 | external | array-like access to external data files |
| 27 | 73,672 | 106,871 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 75,093 | 106,871 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 76,995 | 48,941 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 77,766 | 48,941 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 78,007 | 151,100 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 82,612 | 106,871 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 95,038 | 151,100 | ms-uniprot | ms-uniprot |
| 34 | 97,640 | 60,252 | sample_tasks | Sample Tap Tasks |
| 35 | 100,655 | 77,799 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 113,031 | 106,871 | arrayio | Array-like behavior for archival files. |
| 37 | 114,733 | 77,799 | root | This rubygem does not have a description or summary. |
| 38 | 115,215 | 151,100 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 120,812 | 106,871 | data_graph | This rubygem does not have a description or summary. |
| 40 | 123,664 | 151,100 | goactive | ActiveRecord models for GO. |
| 41 | 127,387 | 151,100 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 128,653 | 77,799 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 129,286 | 106,871 | toe | A tap development suite |
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