| 1 | 11,607 | 11,399 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 18,357 | 28,201 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 18,970 | 16,686 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 19,926 | 29,773 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 21,818 | 20,828 | tap | A configurable, distributable workflow framework. |
| 6 | 24,960 | 28,201 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 7 | 25,338 | 40,512 | config_parser | Parse command-line options into a configuration hash |
| 8 | 25,393 | 69,179 | RSRuby | An R to Ruby bridge |
| 9 | 25,419 | 21,376 | ms-core | basic, shared functionality for mspire libraries. |
| 10 | 29,890 | 23,967 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 35,066 | 26,828 | tap-gen | Generators for Tap |
| 12 | 36,197 | 28,201 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 40,848 | 26,828 | tap-http | A task library for submitting http requests using Tap. |
| 14 | 40,954 | 28,201 | rap | A rakish extension to tap. |
| 15 | 44,694 | 31,682 | tap-server | A web interface for tap. |
| 16 | 44,810 | 31,682 | tap-test | Test modules for Tap |
| 17 | 48,379 | 26,828 | ms-fasta | provides programmatic access to fasta files |
| 18 | 50,409 | 28,201 | tap-tasks | A set of standard Tap tasks |
| 19 | 50,442 | 103,058 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 52,103 | 54,325 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 53,105 | 103,058 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 60,052 | 29,773 | gemdev | Making gem development a bit easier. |
| 23 | 62,406 | 36,779 | ms-mascot | An Mspire library supporting Mascot. |
| 24 | 62,470 | 29,773 | joinfix | A reflection-based solution to the fixture join problem. |
| 25 | 65,056 | 36,779 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 70,454 | 46,026 | external | array-like access to external data files |
| 27 | 74,234 | 46,026 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 75,675 | 40,512 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 77,618 | 46,026 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 78,407 | 46,026 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 78,678 | 103,058 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 83,469 | 69,179 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 95,749 | 54,325 | ms-uniprot | ms-uniprot |
| 34 | 98,344 | 54,325 | sample_tasks | Sample Tap Tasks |
| 35 | 101,107 | 46,026 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 113,895 | 69,179 | arrayio | Array-like behavior for archival files. |
| 37 | 115,550 | 54,325 | root | This rubygem does not have a description or summary. |
| 38 | 115,998 | 54,325 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 121,630 | 103,058 | data_graph | This rubygem does not have a description or summary. |
| 40 | 124,497 | 54,325 | goactive | ActiveRecord models for GO. |
| 41 | 128,328 | 69,179 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 129,565 | 69,179 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 130,219 | 103,058 | toe | A tap development suite |
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