| 1 | 11,652 | 7,780 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 18,487 | 26,848 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 19,085 | 19,862 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 20,049 | 23,574 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 21,880 | 14,300 | tap | A configurable, distributable workflow framework. |
| 6 | 24,922 | 24,575 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 7 | 25,211 | 21,099 | config_parser | Parse command-line options into a configuration hash |
| 8 | 25,530 | 26,848 | ms-core | basic, shared functionality for mspire libraries. |
| 9 | 25,602 | 106,124 | RSRuby | An R to Ruby bridge |
| 10 | 30,030 | 29,667 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 35,227 | 33,451 | tap-gen | Generators for Tap |
| 12 | 36,397 | 35,780 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 41,032 | 38,645 | tap-http | A task library for submitting http requests using Tap. |
| 14 | 41,125 | 38,645 | rap | A rakish extension to tap. |
| 15 | 44,861 | 42,164 | tap-server | A web interface for tap. |
| 16 | 44,888 | 26,848 | tap-test | Test modules for Tap |
| 17 | 48,576 | 46,492 | ms-fasta | provides programmatic access to fasta files |
| 18 | 50,593 | 46,492 | tap-tasks | A set of standard Tap tasks |
| 19 | 50,668 | 52,183 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 52,146 | 59,868 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 53,287 | 46,492 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 60,311 | 59,868 | gemdev | Making gem development a bit easier. |
| 23 | 62,418 | 59,868 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 62,708 | 59,868 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 65,308 | 59,868 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 70,768 | 70,356 | external | array-like access to external data files |
| 27 | 74,508 | 70,356 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 76,000 | 70,356 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 77,897 | 70,356 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 78,679 | 84,476 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 78,961 | 70,356 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 83,921 | 106,124 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 96,123 | 84,476 | ms-uniprot | ms-uniprot |
| 34 | 98,625 | 84,476 | sample_tasks | Sample Tap Tasks |
| 35 | 101,261 | 84,476 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 114,281 | 106,124 | arrayio | Array-like behavior for archival files. |
| 37 | 115,971 | 106,124 | root | This rubygem does not have a description or summary. |
| 38 | 116,390 | 106,124 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 122,095 | 144,706 | data_graph | This rubygem does not have a description or summary. |
| 40 | 124,961 | 106,124 | goactive | ActiveRecord models for GO. |
| 41 | 128,886 | 106,124 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 130,120 | 106,124 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 130,791 | 144,706 | toe | A tap development suite |
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