| 1 | 11,083 | 9,431 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 2 | 17,518 | 42,408 | lazydoc | Lazily pull documentation out of source files. |
| 3 | 18,203 | 13,092 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 4 | 18,952 | 60,852 | rsruby | RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statist... |
| 5 | 20,970 | 30,570 | tap | A configurable, distributable workflow framework. |
| 6 | 24,058 | 87,218 | RSRuby | An R to Ruby bridge |
| 7 | 24,269 | 71,873 | configurable | Configurable adds methods to declare class configurations. Configurations are inheritab... |
| 8 | 24,537 | 18,712 | ms-core | basic, shared functionality for mspire libraries. |
| 9 | 24,638 | 87,218 | config_parser | Parse command-line options into a configuration hash |
| 10 | 29,078 | 19,406 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 11 | 34,014 | 30,570 | tap-gen | Generators for Tap |
| 12 | 35,236 | 24,196 | ms-in_silico | peptide fragmentation and protein digestion |
| 13 | 39,655 | 35,377 | rap | A rakish extension to tap. |
| 14 | 39,801 | 28,612 | tap-http | A task library for submitting http requests using Tap. |
| 15 | 43,574 | 30,570 | tap-server | A web interface for tap. |
| 16 | 43,739 | 42,408 | tap-test | Test modules for Tap |
| 17 | 47,206 | 42,408 | ms-fasta | provides programmatic access to fasta files |
| 18 | 49,100 | 53,105 | tap-tasks | A set of standard Tap tasks |
| 19 | 49,291 | 23,024 | linecook | Linecook generates shell scripts using an extensible set of ERB helpers. The shell scri... |
| 20 | 50,242 | 87,218 | constants | Libraries of constants. Includes libraries for elements, particles, and physical const... |
| 21 | 51,986 | 32,713 | shell_test | Provides test modules to simplify testing of shell scripts. ShellTest is not a testing ... |
| 22 | 58,611 | 53,105 | gemdev | Making gem development a bit easier. |
| 23 | 60,802 | 35,377 | joinfix | A reflection-based solution to the fixture join problem. |
| 24 | 61,457 | 42,408 | ms-mascot | An Mspire library supporting Mascot. |
| 25 | 63,906 | 38,536 | tap-ubiquity | Making Tap available in Ubiquity |
| 26 | 68,874 | 60,852 | external | array-like access to external data files |
| 27 | 72,810 | 47,026 | molecules | A library of molecules for scientific calculations in Ruby. |
| 28 | 74,035 | 145,949 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 29 | 76,188 | 42,408 | tap-mechanize | A task library for submitting http requests using Tap. |
| 30 | 76,895 | 60,852 | tap-suite | A collection of modules to rapidly develop Tap workflows |
| 31 | 77,204 | 35,377 | linebook | The standard library for Linecook, providing helpers for POSIX and Linux. |
| 32 | 80,985 | 71,873 | active_unimod_generator | ActiveRecord models and database migrations for Unimod. |
| 33 | 93,651 | 87,218 | ms-uniprot | ms-uniprot |
| 34 | 96,248 | 71,873 | sample_tasks | Sample Tap Tasks |
| 35 | 100,619 | 53,105 | runarray | a pure ruby implementation of a numeric array interface. |
| 36 | 111,649 | 110,823 | arrayio | Array-like behavior for archival files. |
| 37 | 113,707 | 87,218 | root | This rubygem does not have a description or summary. |
| 38 | 113,918 | 110,823 | gitgo | Issues, comments, and a wiki for git projects. |
| 39 | 119,575 | 110,823 | data_graph | This rubygem does not have a description or summary. |
| 40 | 122,080 | 87,218 | goactive | ActiveRecord models for GO. |
| 41 | 126,086 | 110,823 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 42 | 127,240 | 60,852 | scxml | Fast, lightweight access to simple xml data. |
| 43 | 128,191 | 71,873 | toe | A tap development suite |
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