Pjotrp's Gems

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#Total RankDaily RankNameSummary
124,83130,305bio-blastxmlparserFast big data BLAST XML parser and library; this libxml2 based version is 50x faster th...
227,33663,432bio-gff3GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
329,81563,432bio-vcfSmart lazy multi-threaded parser for VCF format with useful filtering and output rewrit...
431,88463,432bio-alignmentSupport for multiple sequence alignments (MSA)
532,30730,305bio-loggerLog4r wrapper for BioRuby
632,75763,432bio-tableFunctions and tools for tranforming and changing tab delimited and comma separated tabl...
742,18463,432bio-bigbioFasta reader, ORF emitter, sequence translation
847,63563,432bio-gemma-wrapperGEMMA wrapper adds LOCO and permutation support. Also runs in parallel and caches K bet...
966,44422,084rq-ruby1.8Zero configuration job scheduler for computer clusters
1071,54663,432bio-rdfStore relationships in a triple-store, such as gene enrichment and QTL, and use this in...
1171,93063,432bio-affyAffymetrix microarray file format parser (CEL/CDF) for Ruby. FFI binding to Biolib po...
1273,19663,432bio-locusA tool for fast querying and filtering of genome locations in VCF and other formats
1381,96625,458regressiontestRegression testing for the command line, and library API
1486,43763,432once-onlyRun programs and scripts once only. Especially useful for PBS and GRID computing
15132,49463,432bio-exominerParse publications for gene names in a fuzzy fashion
16161,02063,432bio-qtlHDRuby tools and scripts for QTL mapping, part of the qtlHD project