| 1 | 25,692 | 31,100 | bio-blastxmlparser | Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th... |
| 2 | 28,400 | 45,253 | bio-gff3 | GFF3 (genome browser) information and digest mRNA and CDS sequences.
Options for low me... |
| 3 | 29,836 | 20,514 | bio-vcf | Smart lazy multi-threaded parser for VCF format with useful filtering and output rewrit... |
| 4 | 32,979 | 31,100 | bio-alignment | Support for multiple sequence alignments (MSA) |
| 5 | 33,255 | 51,418 | bio-logger | Log4r wrapper for BioRuby |
| 6 | 34,051 | 59,154 | bio-table | Functions and tools for tranforming and changing tab delimited and comma separated tabl... |
| 7 | 43,538 | 40,522 | bio-bigbio | Fasta reader, ORF emitter, sequence translation |
| 8 | 48,089 | 45,253 | bio-gemma-wrapper | GEMMA wrapper adds LOCO and permutation support. Also runs in parallel and caches K bet... |
| 9 | 67,138 | 51,418 | rq-ruby1.8 | Zero configuration job scheduler for computer clusters |
| 10 | 72,615 | 51,418 | bio-rdf | Store relationships in a triple-store, such as gene enrichment and QTL, and use this in... |
| 11 | 73,488 | 51,418 | bio-affy | Affymetrix microarray file format parser
(CEL/CDF) for Ruby. FFI binding to Biolib po... |
| 12 | 74,116 | 70,021 | bio-locus | A tool for fast querying and filtering of genome locations in VCF and other formats |
| 13 | 82,494 | 45,253 | regressiontest | Regression testing for the command line, and library API |
| 14 | 87,507 | 85,218 | once-only | Run programs and scripts once only. Especially
useful for PBS and GRID computing |
| 15 | 133,999 | 59,154 | bio-exominer | Parse publications for gene names in a fuzzy fashion |
| 16 | 162,422 | 85,218 | bio-qtlHD | Ruby tools and scripts for QTL mapping, part of the qtlHD project |
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