| 1 | 24,438 | 16,242 | bio-blastxmlparser | Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th... |
| 2 | 26,567 | 19,942 | bio-gff3 | GFF3 (genome browser) information and digest mRNA and CDS sequences.
Options for low me... |
| 3 | 29,956 | 16,242 | bio-vcf | Smart lazy multi-threaded parser for VCF format with useful filtering and output rewrit... |
| 4 | 31,132 | 20,990 | bio-alignment | Support for multiple sequence alignments (MSA) |
| 5 | 31,900 | 20,990 | bio-logger | Log4r wrapper for BioRuby |
| 6 | 32,009 | 15,272 | bio-table | Functions and tools for tranforming and changing tab delimited and comma separated tabl... |
| 7 | 41,247 | 28,086 | bio-bigbio | Fasta reader, ORF emitter, sequence translation |
| 8 | 48,372 | 18,952 | bio-gemma-wrapper | GEMMA wrapper adds LOCO and permutation support. Also runs in parallel and caches K bet... |
| 9 | 65,311 | 89,538 | rq-ruby1.8 | Zero configuration job scheduler for computer clusters |
| 10 | 70,350 | 40,337 | bio-rdf | Store relationships in a triple-store, such as gene enrichment and QTL, and use this in... |
| 11 | 70,704 | 35,144 | bio-affy | Affymetrix microarray file format parser
(CEL/CDF) for Ruby. FFI binding to Biolib po... |
| 12 | 76,107 | 25,774 | bio-locus | A tool for fast querying and filtering of genome locations in VCF and other formats |
| 13 | 80,776 | 89,538 | regressiontest | Regression testing for the command line, and library API |
| 14 | 85,324 | 89,538 | once-only | Run programs and scripts once only. Especially
useful for PBS and GRID computing |
| 15 | 131,506 | 58,808 | bio-exominer | Parse publications for gene names in a fuzzy fashion |
| 16 | 159,394 | 58,808 | bio-qtlHD | Ruby tools and scripts for QTL mapping, part of the qtlHD project |
xmisao