1 | 24,831 | 30,305 | bio-blastxmlparser | Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th... |
2 | 27,336 | 63,432 | bio-gff3 | GFF3 (genome browser) information and digest mRNA and CDS sequences.
Options for low me... |
3 | 29,815 | 63,432 | bio-vcf | Smart lazy multi-threaded parser for VCF format with useful filtering and output rewrit... |
4 | 31,884 | 63,432 | bio-alignment | Support for multiple sequence alignments (MSA) |
5 | 32,307 | 30,305 | bio-logger | Log4r wrapper for BioRuby |
6 | 32,757 | 63,432 | bio-table | Functions and tools for tranforming and changing tab delimited and comma separated tabl... |
7 | 42,184 | 63,432 | bio-bigbio | Fasta reader, ORF emitter, sequence translation |
8 | 47,635 | 63,432 | bio-gemma-wrapper | GEMMA wrapper adds LOCO and permutation support. Also runs in parallel and caches K bet... |
9 | 66,444 | 22,084 | rq-ruby1.8 | Zero configuration job scheduler for computer clusters |
10 | 71,546 | 63,432 | bio-rdf | Store relationships in a triple-store, such as gene enrichment and QTL, and use this in... |
11 | 71,930 | 63,432 | bio-affy | Affymetrix microarray file format parser
(CEL/CDF) for Ruby. FFI binding to Biolib po... |
12 | 73,196 | 63,432 | bio-locus | A tool for fast querying and filtering of genome locations in VCF and other formats |
13 | 81,966 | 25,458 | regressiontest | Regression testing for the command line, and library API |
14 | 86,437 | 63,432 | once-only | Run programs and scripts once only. Especially
useful for PBS and GRID computing |
15 | 132,494 | 63,432 | bio-exominer | Parse publications for gene names in a fuzzy fashion |
16 | 161,020 | 63,432 | bio-qtlHD | Ruby tools and scripts for QTL mapping, part of the qtlHD project |