| 1 | 26,280 | 21,589 | bio-blastxmlparser | Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th... |
| 2 | 29,453 | 60,205 | bio-gff3 | GFF3 (genome browser) information and digest mRNA and CDS sequences.
Options for low me... |
| 3 | 29,811 | 39,648 | bio-vcf | Smart lazy multi-threaded parser for VCF format with useful filtering and output rewrit... |
| 4 | 33,744 | 102,761 | bio-alignment | Support for multiple sequence alignments (MSA) |
| 5 | 34,400 | 30,840 | bio-logger | Log4r wrapper for BioRuby |
| 6 | 35,292 | 50,800 | bio-table | Functions and tools for tranforming and changing tab delimited and comma separated tabl... |
| 7 | 44,364 | 60,205 | bio-bigbio | Fasta reader, ORF emitter, sequence translation |
| 8 | 47,574 | 44,354 | bio-gemma-wrapper | GEMMA wrapper adds LOCO and permutation support. Also runs in parallel and caches K bet... |
| 9 | 67,298 | 44,354 | rq-ruby1.8 | Zero configuration job scheduler for computer clusters |
| 10 | 73,479 | 154,925 | bio-rdf | Store relationships in a triple-store, such as gene enrichment and QTL, and use this in... |
| 11 | 73,638 | 60,205 | bio-affy | Affymetrix microarray file format parser
(CEL/CDF) for Ruby. FFI binding to Biolib po... |
| 12 | 74,416 | 75,382 | bio-locus | A tool for fast querying and filtering of genome locations in VCF and other formats |
| 13 | 82,569 | 102,761 | regressiontest | Regression testing for the command line, and library API |
| 14 | 88,494 | 102,761 | once-only | Run programs and scripts once only. Especially
useful for PBS and GRID computing |
| 15 | 133,471 | 102,761 | bio-exominer | Parse publications for gene names in a fuzzy fashion |
| 16 | 164,496 | 102,761 | bio-qtlHD | Ruby tools and scripts for QTL mapping, part of the qtlHD project |
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