Dariogf's Gems

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#Total RankDaily RankNameSummary
113,96550,777scbi_multi_gz_readerWrapper to read gz/gzip files composed of multiple gz streams (eg, made by doing a cat...
220,336111,482seqtrimnextSeqtrimnext is a plugin based system to preprocess and clean sequences from multiple NG...
330,65550,777full_lengther_nextFULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
441,746111,482scbi_blastscbi_blast is a ruby gem to handle blast+ executions using pipes when possible to read ...
544,509111,482scbi_mapreducescbi_mapreduce brings parallel and distributed computing capabilities to your code, wit...
648,91350,777scbi_cominerscbi_cominer is a ruby gem to calculate some interesting regions and statistics from co...
749,267111,482scbi_fastqscbi_fastq is a ruby gem to read/write FASTQ files (DNA/RNA sequences) with qualities i...
870,929111,482scbi_plotscbi_plot is a simplified wrapper to create plots with gnuplot.
972,756111,482seqtrimnext_reportA PDF report generator for SeqtrimNEXT preprocessing software from SCBI.
1093,494111,482scbi_fqbinRead/write compressed fastq or fasta files in fqbin format
1195,87167,232scbi_fastascbi_fasta is a ruby gem to read FASTA+QUAL files (DNA/RNA sequences).
12104,32488,523scbi_distributed_blastscbi_distributed_blast is a simple distribution mechanism for blast+ made on top of scb...
13105,286111,482scbi_headersscbi_headers is a gem that provides consistent text headers for command line applications.
14105,54688,523scbi_queue_systemscbi_queue_system (SQS) handles a simple queue of jobs executions over multiple machine...
15110,132111,482use_case_diagramA gem to generate user cases in UML using dot
16114,127111,482scbi_zcatRead files from a zcat pipe of a gz file. Useful to read multiple gz streams that are s...
17125,38350,777scbi_mathscbi_math is a ruby gem based on narray to do some additional statistics,
18142,050111,482scbi_acescbi_ace is a ruby gem to read and parse ACE files containing contigs. It automatically...
19142,733111,482scbi_testcodescbi_testcode is a ruby gem that checks if a genetic sequence is coding or not based on...
20158,629111,482scbi_goGeneOntology tools to summarize and graph go terms