Dariogf's Gems

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#Total RankDaily RankNameSummary
113,08651,903scbi_multi_gz_readerWrapper to read gz/gzip files composed of multiple gz streams (eg, made by doing a cat...
219,52951,903seqtrimnextSeqtrimnext is a plugin based system to preprocess and clean sequences from multiple NG...
329,77151,903full_lengther_nextFULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
440,55923,324scbi_blastscbi_blast is a ruby gem to handle blast+ executions using pipes when possible to read ...
543,31230,265scbi_mapreducescbi_mapreduce brings parallel and distributed computing capabilities to your code, wit...
647,59826,816scbi_cominerscbi_cominer is a ruby gem to calculate some interesting regions and statistics from co...
748,06532,594scbi_fastqscbi_fastq is a ruby gem to read/write FASTQ files (DNA/RNA sequences) with qualities i...
869,48539,421scbi_plotscbi_plot is a simplified wrapper to create plots with gnuplot.
971,062113,432seqtrimnext_reportA PDF report generator for SeqtrimNEXT preprocessing software from SCBI.
1091,75462,541scbi_fqbinRead/write compressed fastq or fasta files in fqbin format
1194,64062,541scbi_fastascbi_fasta is a ruby gem to read FASTA+QUAL files (DNA/RNA sequences).
12102,15262,541scbi_distributed_blastscbi_distributed_blast is a simple distribution mechanism for blast+ made on top of scb...
13103,19362,541scbi_queue_systemscbi_queue_system (SQS) handles a simple queue of jobs executions over multiple machine...
14103,27451,903scbi_headersscbi_headers is a gem that provides consistent text headers for command line applications.
15107,972113,432use_case_diagramA gem to generate user cases in UML using dot
16112,37762,541scbi_zcatRead files from a zcat pipe of a gz file. Useful to read multiple gz streams that are s...
17122,91380,119scbi_mathscbi_math is a ruby gem based on narray to do some additional statistics,
18138,82462,541scbi_acescbi_ace is a ruby gem to read and parse ACE files containing contigs. It automatically...
19139,57180,119scbi_testcodescbi_testcode is a ruby gem that checks if a genetic sequence is coding or not based on...
20156,83580,119scbi_goGeneOntology tools to summarize and graph go terms