Dariogf's Gems

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#Total RankDaily RankNameSummary
113,629129,210scbi_multi_gz_readerWrapper to read gz/gzip files composed of multiple gz streams (eg, made by doing a cat...
219,96432,343seqtrimnextSeqtrimnext is a plugin based system to preprocess and clean sequences from multiple NG...
330,31228,569full_lengther_nextFULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
441,15994,007scbi_blastscbi_blast is a ruby gem to handle blast+ executions using pipes when possible to read ...
543,86553,031scbi_mapreducescbi_mapreduce brings parallel and distributed computing capabilities to your code, wit...
648,29594,007scbi_cominerscbi_cominer is a ruby gem to calculate some interesting regions and statistics from co...
748,66061,331scbi_fastqscbi_fastq is a ruby gem to read/write FASTQ files (DNA/RNA sequences) with qualities i...
870,21574,024scbi_plotscbi_plot is a simplified wrapper to create plots with gnuplot.
971,88774,024seqtrimnext_reportA PDF report generator for SeqtrimNEXT preprocessing software from SCBI.
1092,52294,007scbi_fqbinRead/write compressed fastq or fasta files in fqbin format
1195,649129,210scbi_fastascbi_fasta is a ruby gem to read FASTA+QUAL files (DNA/RNA sequences).
12103,23394,007scbi_distributed_blastscbi_distributed_blast is a simple distribution mechanism for blast+ made on top of scb...
13104,30994,007scbi_headersscbi_headers is a gem that provides consistent text headers for command line applications.
14104,346129,210scbi_queue_systemscbi_queue_system (SQS) handles a simple queue of jobs executions over multiple machine...
15109,048129,210use_case_diagramA gem to generate user cases in UML using dot
16113,16261,331scbi_zcatRead files from a zcat pipe of a gz file. Useful to read multiple gz streams that are s...
17124,13574,024scbi_mathscbi_math is a ruby gem based on narray to do some additional statistics,
18140,11894,007scbi_acescbi_ace is a ruby gem to read and parse ACE files containing contigs. It automatically...
19140,912129,210scbi_testcodescbi_testcode is a ruby gem that checks if a genetic sequence is coding or not based on...
20157,390129,210scbi_goGeneOntology tools to summarize and graph go terms