Dariogf's Gems

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#Total RankDaily RankNameSummary
113,02695,107scbi_multi_gz_readerWrapper to read gz/gzip files composed of multiple gz streams (eg, made by doing a cat...
219,46724,466seqtrimnextSeqtrimnext is a plugin based system to preprocess and clean sequences from multiple NG...
329,73430,073full_lengther_nextFULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
440,46244,544scbi_blastscbi_blast is a ruby gem to handle blast+ executions using pipes when possible to read ...
543,22744,544scbi_mapreducescbi_mapreduce brings parallel and distributed computing capabilities to your code, wit...
647,54244,544scbi_cominerscbi_cominer is a ruby gem to calculate some interesting regions and statistics from co...
747,97835,887scbi_fastqscbi_fastq is a ruby gem to read/write FASTQ files (DNA/RNA sequences) with qualities i...
869,35895,107scbi_plotscbi_plot is a simplified wrapper to create plots with gnuplot.
970,92695,107seqtrimnext_reportA PDF report generator for SeqtrimNEXT preprocessing software from SCBI.
1091,67395,107scbi_fqbinRead/write compressed fastq or fasta files in fqbin format
1194,49373,297scbi_fastascbi_fasta is a ruby gem to read FASTA+QUAL files (DNA/RNA sequences).
12102,00695,107scbi_distributed_blastscbi_distributed_blast is a simple distribution mechanism for blast+ made on top of scb...
13103,047128,836scbi_queue_systemscbi_queue_system (SQS) handles a simple queue of jobs executions over multiple machine...
14103,119128,836scbi_headersscbi_headers is a gem that provides consistent text headers for command line applications.
15107,833128,836use_case_diagramA gem to generate user cases in UML using dot
16112,29573,297scbi_zcatRead files from a zcat pipe of a gz file. Useful to read multiple gz streams that are s...
17122,70495,107scbi_mathscbi_math is a ruby gem based on narray to do some additional statistics,
18138,631128,836scbi_acescbi_ace is a ruby gem to read and parse ACE files containing contigs. It automatically...
19139,383128,836scbi_testcodescbi_testcode is a ruby gem that checks if a genetic sequence is coding or not based on...
20156,77895,107scbi_goGeneOntology tools to summarize and graph go terms