Dariogf's Gems

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#Total RankDaily RankNameSummary
111,33591,645scbi_multi_gz_readerWrapper to read gz/gzip files composed of multiple gz streams (eg, made by doing a cat...
218,03391,645seqtrimnextSeqtrimnext is a plugin based system to preprocess and clean sequences from multiple NG...
328,83591,645full_lengther_nextFULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
438,10491,645scbi_blastscbi_blast is a ruby gem to handle blast+ executions using pipes when possible to read ...
541,10991,645scbi_mapreducescbi_mapreduce brings parallel and distributed computing capabilities to your code, wit...
645,18691,645scbi_cominerscbi_cominer is a ruby gem to calculate some interesting regions and statistics from co...
745,67791,645scbi_fastqscbi_fastq is a ruby gem to read/write FASTQ files (DNA/RNA sequences) with qualities i...
865,88191,645scbi_plotscbi_plot is a simplified wrapper to create plots with gnuplot.
967,83491,645seqtrimnext_reportA PDF report generator for SeqtrimNEXT preprocessing software from SCBI.
1088,32391,645scbi_fqbinRead/write compressed fastq or fasta files in fqbin format
1191,36291,645scbi_fastascbi_fasta is a ruby gem to read FASTA+QUAL files (DNA/RNA sequences).
1298,33191,645scbi_distributed_blastscbi_distributed_blast is a simple distribution mechanism for blast+ made on top of scb...
1398,38091,645scbi_queue_systemscbi_queue_system (SQS) handles a simple queue of jobs executions over multiple machine...
1498,98491,645scbi_headersscbi_headers is a gem that provides consistent text headers for command line applications.
15104,65752,782use_case_diagramA gem to generate user cases in UML using dot
16110,79391,645scbi_zcatRead files from a zcat pipe of a gz file. Useful to read multiple gz streams that are s...
17118,08491,645scbi_mathscbi_math is a ruby gem based on narray to do some additional statistics,
18134,40691,645scbi_acescbi_ace is a ruby gem to read and parse ACE files containing contigs. It automatically...
19134,72891,645scbi_testcodescbi_testcode is a ruby gem that checks if a genetic sequence is coding or not based on...
20154,02591,645scbi_goGeneOntology tools to summarize and graph go terms