Dariogf's Gems

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#Total RankDaily RankNameSummary
112,896113,854scbi_multi_gz_readerWrapper to read gz/gzip files composed of multiple gz streams (eg, made by doing a cat...
219,30549,628seqtrimnextSeqtrimnext is a plugin based system to preprocess and clean sequences from multiple NG...
329,68243,003full_lengther_nextFULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
440,25960,111scbi_blastscbi_blast is a ruby gem to handle blast+ executions using pipes when possible to read ...
543,03760,111scbi_mapreducescbi_mapreduce brings parallel and distributed computing capabilities to your code, wit...
647,35949,628scbi_cominerscbi_cominer is a ruby gem to calculate some interesting regions and statistics from co...
747,77377,922scbi_fastqscbi_fastq is a ruby gem to read/write FASTQ files (DNA/RNA sequences) with qualities i...
869,046113,854scbi_plotscbi_plot is a simplified wrapper to create plots with gnuplot.
970,56377,922seqtrimnext_reportA PDF report generator for SeqtrimNEXT preprocessing software from SCBI.
1091,309113,854scbi_fqbinRead/write compressed fastq or fasta files in fqbin format
1194,074113,854scbi_fastascbi_fasta is a ruby gem to read FASTA+QUAL files (DNA/RNA sequences).
12101,640113,854scbi_distributed_blastscbi_distributed_blast is a simple distribution mechanism for blast+ made on top of scb...
13102,507113,854scbi_queue_systemscbi_queue_system (SQS) handles a simple queue of jobs executions over multiple machine...
14102,745113,854scbi_headersscbi_headers is a gem that provides consistent text headers for command line applications.
15107,390113,854use_case_diagramA gem to generate user cases in UML using dot
16112,299113,854scbi_zcatRead files from a zcat pipe of a gz file. Useful to read multiple gz streams that are s...
17122,189113,854scbi_mathscbi_math is a ruby gem based on narray to do some additional statistics,
18138,099113,854scbi_acescbi_ace is a ruby gem to read and parse ACE files containing contigs. It automatically...
19138,801113,854scbi_testcodescbi_testcode is a ruby gem that checks if a genetic sequence is coding or not based on...
20156,980113,854scbi_goGeneOntology tools to summarize and graph go terms