| 1 | 19,680 | 15,812 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,733 | 18,241 | bindeps | binary dependency management for ruby gems |
| 3 | 27,269 | 61,378 | crb-blast | See summary |
| 4 | 38,076 | 27,823 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,874 | 36,242 | transfuse | See summary |
| 6 | 51,786 | 24,586 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 7 | 52,347 | 54,163 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 62,971 | 41,573 | fixwhich | Just the which gem with file permissions fixed |
| 9 | 133,633 | 128,565 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 155,893 | 128,565 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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