| 1 | 19,744 | 52,196 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,129 | 32,370 | bindeps | binary dependency management for ruby gems |
| 3 | 27,650 | 39,122 | crb-blast | See summary |
| 4 | 38,639 | 52,196 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,425 | 84,964 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 50,730 | 84,964 | transfuse | See summary |
| 7 | 52,607 | 52,196 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 8 | 52,784 | 84,964 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 9 | 134,715 | 84,964 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,471 | 84,964 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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