| 1 | 19,791 | 20,742 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,195 | 62,503 | bindeps | binary dependency management for ruby gems |
| 3 | 27,699 | 32,593 | crb-blast | See summary |
| 4 | 38,725 | 38,570 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,515 | 62,503 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 50,813 | 38,570 | transfuse | See summary |
| 7 | 52,702 | 43,384 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 8 | 52,866 | 32,593 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 9 | 134,863 | 83,278 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,536 | 122,573 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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