| 1 | 19,576 | 15,271 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,847 | 28,083 | bindeps | binary dependency management for ruby gems |
| 3 | 27,410 | 34,068 | crb-blast | See summary |
| 4 | 38,311 | 128,204 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,552 | 56,956 | transfuse | See summary |
| 6 | 52,256 | 56,956 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 7 | 52,668 | 40,194 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 63,025 | 49,827 | fixwhich | Just the which gem with file permissions fixed |
| 9 | 133,945 | 128,204 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 155,788 | 100,562 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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