| 1 | 19,890 | 25,659 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,310 | 16,059 | bindeps | binary dependency management for ruby gems |
| 3 | 27,855 | 32,216 | crb-blast | See summary |
| 4 | 39,015 | 30,511 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,912 | 25,659 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 51,115 | 44,446 | transfuse | See summary |
| 7 | 53,045 | 90,939 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 8 | 53,065 | 30,511 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 9 | 135,417 | 90,939 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,694 | 44,446 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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