| 1 | 19,658 | 19,743 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 19,976 | 22,558 | bindeps | binary dependency management for ruby gems |
| 3 | 27,521 | 26,027 | crb-blast | See summary |
| 4 | 38,438 | 38,896 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,113 | 48,579 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 50,637 | 32,925 | transfuse | See summary |
| 7 | 52,455 | 100,318 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 8 | 52,711 | 100,318 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 9 | 134,198 | 100,318 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,166 | 100,318 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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