| 1 | 19,825 | 30,155 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,239 | 85,135 | bindeps | binary dependency management for ruby gems |
| 3 | 27,770 | 52,956 | crb-blast | See summary |
| 4 | 38,813 | 27,876 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,617 | 85,135 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 50,871 | 52,956 | transfuse | See summary |
| 7 | 52,778 | 52,956 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 8 | 52,928 | 52,956 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 9 | 134,985 | 85,135 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,630 | 85,135 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |