| 1 | 19,023 | 42,025 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,198 | 31,663 | bindeps | binary dependency management for ruby gems |
| 3 | 26,671 | 53,556 | crb-blast | See summary |
| 4 | 37,096 | 86,038 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,520 | 86,038 | transfuse | See summary |
| 6 | 50,874 | 86,038 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 7 | 51,605 | 24,968 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 62,811 | 42,025 | fixwhich | Just the which gem with file permissions fixed |
| 9 | 132,235 | 86,038 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 154,252 | 86,038 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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