| 1 | 20,033 | 28,215 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,485 | 22,318 | bindeps | binary dependency management for ruby gems |
| 3 | 28,065 | 36,247 | crb-blast | See summary |
| 4 | 39,097 | 32,819 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 51,035 | 48,072 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 51,165 | 78,082 | transfuse | See summary |
| 7 | 53,145 | 78,082 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 53,214 | 59,025 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 9 | 135,762 | 117,513 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,799 | 117,513 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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