| 1 | 19,694 | 20,594 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,058 | 55,176 | bindeps | binary dependency management for ruby gems |
| 3 | 27,583 | 29,296 | crb-blast | See summary |
| 4 | 38,538 | 55,176 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,266 | 41,609 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 50,649 | 26,001 | transfuse | See summary |
| 7 | 52,527 | 34,125 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 8 | 52,702 | 34,125 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 9 | 134,507 | 88,817 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,231 | 88,817 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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