| 1 | 20,660 | 26,965 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 21,134 | 31,045 | bindeps | binary dependency management for ruby gems |
| 3 | 28,313 | 18,838 | crb-blast | See summary |
| 4 | 39,872 | 34,763 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 51,979 | 55,240 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 52,363 | 89,752 | transfuse | See summary |
| 7 | 53,922 | 26,965 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 54,731 | 89,752 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 9 | 138,453 | 41,131 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 159,589 | 89,752 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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