| 1 | 20,303 | 21,002 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,824 | 20,603 | bindeps | binary dependency management for ruby gems |
| 3 | 27,997 | 18,665 | crb-blast | See summary |
| 4 | 39,417 | 60,772 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 51,612 | 24,101 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 51,712 | 60,772 | transfuse | See summary |
| 7 | 53,420 | 53,366 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 53,986 | 123,456 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 9 | 137,209 | 123,456 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 157,983 | 90,350 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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