| 1 | 20,083 | 29,140 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,538 | 99,064 | bindeps | binary dependency management for ruby gems |
| 3 | 28,106 | 38,858 | crb-blast | See summary |
| 4 | 39,111 | 48,016 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 51,133 | 99,064 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 51,193 | 64,520 | transfuse | See summary |
| 7 | 53,215 | 38,858 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 8 | 53,317 | 99,064 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 9 | 135,755 | 99,064 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,821 | 48,016 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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