| 1 | 19,628 | 18,162 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 19,911 | 30,356 | bindeps | binary dependency management for ruby gems |
| 3 | 27,469 | 34,395 | crb-blast | See summary |
| 4 | 38,420 | 34,395 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,018 | 59,892 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 50,628 | 79,559 | transfuse | See summary |
| 7 | 52,346 | 114,590 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 8 | 52,688 | 59,892 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 9 | 134,028 | 114,590 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,099 | 114,590 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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