| 1 | 19,671 | 13,730 | transrate | a library and command-line tool for quality assessment of de-novo transcriptome assemblies |
| 2 | 20,000 | 18,795 | bindeps | binary dependency management for ruby gems |
| 3 | 27,538 | 19,880 | crb-blast | See summary |
| 4 | 38,478 | 39,204 | biopsy | framework for optimising any computational pipeline or program |
| 5 | 50,154 | 33,990 | fixwhich | Just the which gem with file permissions fixed |
| 6 | 50,634 | 20,488 | transfuse | See summary |
| 7 | 52,493 | 65,953 | datastructures | useful data structures implemented in pure Ruby for my data structures challenge. |
| 8 | 52,729 | 46,755 | bettersam | Extended SAM (Sequence Alignment/Map) file parsing |
| 9 | 134,213 | 115,123 | assemblotron | automatically produce *optimal* assemblies from DNA/RNA sequencing reads |
| 10 | 156,052 | 46,755 | seqtkrb | Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk |
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