| 1 | 14,601 | 13,831 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 18,883 | 28,742 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 19,815 | 64,208 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,291 | 22,399 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 46,151 | 45,693 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 48,205 | 84,187 | rya | My personal library |
| 7 | 62,341 | 34,472 | abort_if | Easy error logging and assertions.. |
| 8 | 67,313 | 52,685 | pasv_lib | Library code for PASV |
| 9 | 72,472 | 64,208 | matr | Deal text file matrices. |
| 10 | 73,996 | 40,824 | big_simon | Viral host discovery pipeline. |
| 11 | 82,612 | 84,187 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 92,949 | 52,685 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 98,770 | 124,969 | shaq_lib | Library code for Shaq assembler |
| 14 | 112,745 | 64,208 | nr_test | test |
| 15 | 124,217 | 45,693 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 126,256 | 84,187 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 153,765 | 45,693 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 163,386 | 124,969 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 167,348 | 124,969 | zeta_hunter | Library code for ZetaHunter. |
xmisao