| 1 | 14,422 | 46,395 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 18,838 | 19,100 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 19,785 | 25,251 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,271 | 59,666 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 46,126 | 33,145 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 48,145 | 123,214 | rya | My personal library |
| 7 | 62,261 | 82,222 | abort_if | Easy error logging and assertions.. |
| 8 | 67,291 | 46,395 | pasv_lib | Library code for PASV |
| 9 | 72,430 | 38,280 | matr | Deal text file matrices. |
| 10 | 74,085 | 25,251 | big_simon | Viral host discovery pipeline. |
| 11 | 82,508 | 82,222 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 92,983 | 59,666 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 98,631 | 82,222 | shaq_lib | Library code for Shaq assembler |
| 14 | 112,673 | 82,222 | nr_test | test |
| 15 | 124,365 | 59,666 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 126,213 | 59,666 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 153,734 | 123,214 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 163,126 | 59,666 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 167,172 | 123,214 | zeta_hunter | Library code for ZetaHunter. |
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