| 1 | 14,735 | 32,169 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 17,352 | 11,157 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 18,323 | 11,843 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,427 | 14,287 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 45,994 | 26,305 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 48,758 | 27,962 | rya | My personal library |
| 7 | 62,200 | 41,979 | abort_if | Easy error logging and assertions.. |
| 8 | 67,105 | 38,031 | pasv_lib | Library code for PASV |
| 9 | 72,245 | 52,733 | matr | Deal text file matrices. |
| 10 | 75,423 | 52,733 | big_simon | Viral host discovery pipeline. |
| 11 | 79,638 | 70,697 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 95,584 | 70,697 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 97,661 | 84,840 | shaq_lib | Library code for Shaq assembler |
| 14 | 112,994 | 84,840 | nr_test | test |
| 15 | 124,263 | 84,840 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 124,672 | 105,358 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 152,514 | 105,358 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 158,989 | 168,370 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 163,100 | 136,377 | zeta_hunter | Library code for ZetaHunter. |
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