| 1 | 14,271 | 21,493 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 18,602 | 57,531 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 19,519 | 57,531 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,097 | 94,537 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 45,901 | 94,537 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 47,972 | 94,537 | rya | My personal library |
| 7 | 62,210 | 26,330 | abort_if | Easy error logging and assertions.. |
| 8 | 67,144 | 94,537 | pasv_lib | Library code for PASV |
| 9 | 72,095 | 94,537 | matr | Deal text file matrices. |
| 10 | 73,876 | 36,032 | big_simon | Viral host discovery pipeline. |
| 11 | 82,048 | 94,537 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 92,536 | 24,666 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 98,202 | 94,537 | shaq_lib | Library code for Shaq assembler |
| 14 | 112,444 | 57,531 | nr_test | test |
| 15 | 124,064 | 94,537 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 125,766 | 57,531 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 153,085 | 94,537 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 162,599 | 94,537 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 166,418 | 57,531 | zeta_hunter | Library code for ZetaHunter. |