| 1 | 14,057 | 78,816 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 18,427 | 15,778 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 19,333 | 18,284 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,092 | 23,819 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 45,906 | 21,963 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 48,081 | 35,800 | rya | My personal library |
| 7 | 62,300 | 50,095 | abort_if | Easy error logging and assertions.. |
| 8 | 67,247 | 50,095 | pasv_lib | Library code for PASV |
| 9 | 72,160 | 53,294 | matr | Deal text file matrices. |
| 10 | 74,221 | 50,095 | big_simon | Viral host discovery pipeline. |
| 11 | 81,991 | 87,602 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 92,648 | 66,059 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 98,491 | 71,921 | shaq_lib | Library code for Shaq assembler |
| 14 | 112,693 | 112,619 | nr_test | test |
| 15 | 124,545 | 131,109 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 125,749 | 98,240 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 153,535 | 157,203 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 162,220 | 131,109 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 166,158 | 131,109 | zeta_hunter | Library code for ZetaHunter. |
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