Mooreryan's Gems

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#Total RankDaily RankNameSummary
114,85330,884shannonSimple gem to calculate Shannon entropy.
219,24249,580parse_fastaProvides nice, programmatic access to fasta and fastq files, as well as providing Seque...
320,11149,580irokiCommand line app and library code for Iroki, a phylogenetic tree customization program.
433,64249,580aaiCalculate Seanie's amino acid similarity score between multiple genomes/bins.
546,70049,580tree_clustersSnazzy code for working with each cluster in a tree.
648,58049,580ryaMy personal library
762,57021,303abort_ifEasy error logging and assertions..
867,90749,580pasv_libLibrary code for PASV
973,29049,580matrDeal text file matrices.
1074,35749,580big_simonViral host discovery pipeline.
1183,69649,580stat_cFast, well documented C stats extension for Ruby.
1293,61749,580coutinho_assemblyRun Coutinho's assembly pipeline.
1399,79349,580shaq_libLibrary code for Shaq assembler
14113,25849,580nr_testtest
15125,22749,580lsaLatent semantic analysis pipeline for genomes and metagenomes
16127,55649,580windMy personal Ruby core extensions including a super fast buffered version of each_line.
17155,46949,580iroki_libLibrary code for Iroki, a phylogenetic tree customization program.
18164,90149,580blosumCommon substitution matrices for sequence alignment.
19169,38649,580zeta_hunterLibrary code for ZetaHunter.