| 1 | 14,898 | 67,232 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 19,336 | 60,867 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 20,208 | 9,958 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,776 | 111,482 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 46,858 | 88,523 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 48,732 | 88,523 | rya | My personal library |
| 7 | 62,350 | 47,418 | abort_if | Easy error logging and assertions.. |
| 8 | 68,096 | 111,482 | pasv_lib | Library code for PASV |
| 9 | 73,468 | 28,395 | matr | Deal text file matrices. |
| 10 | 74,474 | 111,482 | big_simon | Viral host discovery pipeline. |
| 11 | 83,945 | 111,482 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 93,793 | 47,418 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 100,060 | 111,482 | shaq_lib | Library code for Shaq assembler |
| 14 | 113,417 | 111,482 | nr_test | test |
| 15 | 125,574 | 50,777 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 127,942 | 111,482 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 156,008 | 67,232 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 165,492 | 111,482 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 170,090 | 111,482 | zeta_hunter | Library code for ZetaHunter. |