| 1 | 14,373 | 15,146 | shannon | Simple gem to calculate Shannon entropy. |
| 2 | 18,670 | 10,453 | parse_fasta | Provides nice, programmatic access to fasta and fastq files, as well as providing Seque... |
| 3 | 19,607 | 25,007 | iroki | Command line app and library code for Iroki, a phylogenetic tree customization program. |
| 4 | 33,078 | 20,451 | aai | Calculate Seanie's amino acid similarity score between multiple genomes/bins. |
| 5 | 45,952 | 90,780 | tree_clusters | Snazzy code for working with each cluster in a tree. |
| 6 | 47,958 | 58,870 | rya | My personal library |
| 7 | 62,162 | 50,548 | abort_if | Easy error logging and assertions.. |
| 8 | 67,045 | 30,160 | pasv_lib | Library code for PASV |
| 9 | 72,189 | 37,154 | matr | Deal text file matrices. |
| 10 | 73,914 | 122,967 | big_simon | Viral host discovery pipeline. |
| 11 | 82,155 | 90,780 | stat_c | Fast, well documented C stats extension for Ruby. |
| 12 | 92,670 | 169,728 | coutinho_assembly | Run Coutinho's assembly pipeline. |
| 13 | 98,357 | 122,967 | shaq_lib | Library code for Shaq assembler |
| 14 | 112,510 | 50,548 | nr_test | test |
| 15 | 124,076 | 70,826 | lsa | Latent semantic analysis pipeline for genomes and metagenomes |
| 16 | 125,895 | 90,780 | wind | My personal Ruby core extensions including a super fast buffered version of each_line. |
| 17 | 153,289 | 90,780 | iroki_lib | Library code for Iroki, a phylogenetic tree customization program. |
| 18 | 162,765 | 122,967 | blosum | Common substitution matrices for sequence alignment. |
| 19 | 166,780 | 90,780 | zeta_hunter | Library code for ZetaHunter. |
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