Jtprince549's Gems

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#Total RankDaily RankNameSummary
12,4424,256histogramgives objects the ability to 'histogram' in several useful ways
28,6613,543rserve-simplerinterface layered on top of rserve-client gem for interacting with R
311,0378,126mspiremass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
418,05321,990ms-sequestreads .SRF, .SQT and supports conversions
524,43431,699ms-corebasic, shared functionality for mspire libraries.
628,98931,699ms-msrunA library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an...
731,16889,132gnuplot-multiplotsimple multiplot interface to enhance the gnuplot gem
833,34647,572rubabelRuby interface to the OpenBabel ruby bindings similar to pybel
934,12227,823ms-identmspire library for working with mzIdentML, pepxml, and related.
1034,98719,895ms-in_silicopeptide fragmentation and protein digestion
1137,64927,823axmlAXML - Provides a simple, minimalistic DOM for working with data stored in an XML docum...
1244,74421,990ms-error_rateaids for creating and calculating error rates using target-decoy searches and sample va...
1345,04536,242ms-quantquantitation of mass spectrometry datasets (proteomic, metabolomic/lipidomic). Not rel...
1446,97169,102ms-fastaprovides programmatic access to fasta files
1547,87327,823mspire-lipidomicsdoes lipidomics
1655,49721,990simpleryou should check out rsruby first. This is a very low-tech way to run R. It does have...
1758,51761,378savgolExtends Array class with method which calculates applies Savitzky-Golay filter used for...
1860,49454,163arrayclasslow memory class based on Array
1961,50547,572ms-mascotAn Mspire library supporting Mascot.
2073,72569,102ms-xcaliburAn Mspire library supporting Xcalibur.
2179,55069,102ms-lipidomicsdoes ms lipidomics
2281,97869,102mspire-sequestreads .SRF, .SQT and supports conversions
2383,52061,378diademDynamic isotope analysis for mass spectrometry isotope experiments. Calculates and vis...
2487,47689,132msplinterPredicts how molecules will fragment in a mass spectrometer. Currently focused on lipi...
2591,26789,132hydrogen_bondifieruses pymol
2692,961104,290ms-uniprotms-uniprot
2797,52289,132ms-testdataThe data used to test the mspire libraries is often large and unwieldly. To better su...
2897,848104,290spec-morevery terse syntax for testing/specing ala Test::More
29100,95361,378runarraya pure ruby implementation of a numeric array interface.
30101,31361,378dotmationruby dsl/config to softlink dotfiles that is somewhat github aware
31101,83589,132binnerocbins x, y data into discrete bins using constant time binning. Useful.
32105,8046,797gene_ontologyParses gene ontology .obo files, links terms through `is_a` and provides methods to fin...
33106,080128,565mspire-mascot-datReads mascot dat files with gusto for mspire library.
34109,22747,572MSAbundanceSimSimulate protein abundances given FASTA files.
35111,76461,378mspire-molecular_formulamspire library to handle molecular formulas (including an optional charge state), compl...
36111,84778,158mspire-obosimplified access for obo ontology files. Builds hashes for quick lookup of terms and ...
37116,189104,290bivyuses a simple YAML format to store bibliographies. Then modifies citations in openoffi...
38117,894104,290dna_sequence_alignerdoes high pairwise alignment of sequencing reads with a template using bioruby and clus...
39125,718128,565ms-unimodTasks to setup and utilize a Unimod database.
40149,230104,290mspire-isotopemspire library holding element isotope information. Mostly just holds constants.
41149,369104,290mspire-massmspire library for mass calculations. Mainly holds constants for simple lookup.
42150,723128,565mspire-lipidmass spectrometry based lipidomics - especially shotgun lipidomics.