| 1 | 2,442 | 4,256 | histogram | gives objects the ability to 'histogram' in several useful ways |
| 2 | 8,661 | 3,543 | rserve-simpler | interface layered on top of rserve-client gem for interacting with R |
| 3 | 11,037 | 8,126 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 4 | 18,053 | 21,990 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 5 | 24,434 | 31,699 | ms-core | basic, shared functionality for mspire libraries. |
| 6 | 28,989 | 31,699 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 7 | 31,168 | 89,132 | gnuplot-multiplot | simple multiplot interface to enhance the gnuplot gem |
| 8 | 33,346 | 47,572 | rubabel | Ruby interface to the OpenBabel ruby bindings similar to pybel |
| 9 | 34,122 | 27,823 | ms-ident | mspire library for working with mzIdentML, pepxml, and related. |
| 10 | 34,987 | 19,895 | ms-in_silico | peptide fragmentation and protein digestion |
| 11 | 37,649 | 27,823 | axml | AXML - Provides a simple, minimalistic DOM for working with data stored in an XML docum... |
| 12 | 44,744 | 21,990 | ms-error_rate | aids for creating and calculating error rates using target-decoy searches and sample va... |
| 13 | 45,045 | 36,242 | ms-quant | quantitation of mass spectrometry datasets (proteomic, metabolomic/lipidomic). Not rel... |
| 14 | 46,971 | 69,102 | ms-fasta | provides programmatic access to fasta files |
| 15 | 47,873 | 27,823 | mspire-lipidomics | does lipidomics |
| 16 | 55,497 | 21,990 | simpler | you should check out rsruby first. This is a very low-tech way to run R. It does have... |
| 17 | 58,517 | 61,378 | savgol | Extends Array class with method which calculates applies Savitzky-Golay filter used for... |
| 18 | 60,494 | 54,163 | arrayclass | low memory class based on Array |
| 19 | 61,505 | 47,572 | ms-mascot | An Mspire library supporting Mascot. |
| 20 | 73,725 | 69,102 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 21 | 79,550 | 69,102 | ms-lipidomics | does ms lipidomics |
| 22 | 81,978 | 69,102 | mspire-sequest | reads .SRF, .SQT and supports conversions |
| 23 | 83,520 | 61,378 | diadem | Dynamic isotope analysis for mass spectrometry isotope experiments. Calculates and vis... |
| 24 | 87,476 | 89,132 | msplinter | Predicts how molecules will fragment in a mass spectrometer. Currently focused on lipi... |
| 25 | 91,267 | 89,132 | hydrogen_bondifier | uses pymol |
| 26 | 92,961 | 104,290 | ms-uniprot | ms-uniprot |
| 27 | 97,522 | 89,132 | ms-testdata | The data used to test the mspire libraries is often large and unwieldly. To better
su... |
| 28 | 97,848 | 104,290 | spec-more | very terse syntax for testing/specing ala Test::More |
| 29 | 100,953 | 61,378 | runarray | a pure ruby implementation of a numeric array interface. |
| 30 | 101,313 | 61,378 | dotmation | ruby dsl/config to softlink dotfiles that is somewhat github aware |
| 31 | 101,835 | 89,132 | binneroc | bins x, y data into discrete bins using constant time binning. Useful. |
| 32 | 105,804 | 6,797 | gene_ontology | Parses gene ontology .obo files, links terms through `is_a` and provides methods to fin... |
| 33 | 106,080 | 128,565 | mspire-mascot-dat | Reads mascot dat files with gusto for mspire library. |
| 34 | 109,227 | 47,572 | MSAbundanceSim | Simulate protein abundances given FASTA files. |
| 35 | 111,764 | 61,378 | mspire-molecular_formula | mspire library to handle molecular formulas (including an optional charge state), compl... |
| 36 | 111,847 | 78,158 | mspire-obo | simplified access for obo ontology files. Builds hashes for quick lookup of terms and ... |
| 37 | 116,189 | 104,290 | bivy | uses a simple YAML format to store bibliographies. Then modifies citations in openoffi... |
| 38 | 117,894 | 104,290 | dna_sequence_aligner | does high pairwise alignment of sequencing reads with a template using bioruby and clus... |
| 39 | 125,718 | 128,565 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 40 | 149,230 | 104,290 | mspire-isotope | mspire library holding element isotope information. Mostly just holds constants. |
| 41 | 149,369 | 104,290 | mspire-mass | mspire library for mass calculations. Mainly holds constants for simple lookup. |
| 42 | 150,723 | 128,565 | mspire-lipid | mass spectrometry based lipidomics - especially shotgun lipidomics. |
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