1 | 2,361 | 3,449 | histogram | gives objects the ability to 'histogram' in several useful ways |
2 | 9,493 | 7,261 | rserve-simpler | interface layered on top of rserve-client gem for interacting with R |
3 | 10,680 | 72,875 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
4 | 17,462 | 72,875 | ms-sequest | reads .SRF, .SQT and supports conversions |
5 | 23,848 | 72,875 | ms-core | basic, shared functionality for mspire libraries. |
6 | 28,301 | 72,875 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
7 | 30,133 | 72,875 | gnuplot-multiplot | simple multiplot interface to enhance the gnuplot gem |
8 | 32,666 | 72,875 | rubabel | Ruby interface to the OpenBabel ruby bindings similar to pybel |
9 | 33,464 | 72,875 | ms-ident | mspire library for working with mzIdentML, pepxml, and related. |
10 | 34,470 | 72,875 | ms-in_silico | peptide fragmentation and protein digestion |
11 | 36,928 | 25,921 | axml | AXML - Provides a simple, minimalistic DOM for working with data stored in an XML docum... |
12 | 44,045 | 72,875 | ms-error_rate | aids for creating and calculating error rates using target-decoy searches and sample va... |
13 | 44,239 | 72,875 | ms-quant | quantitation of mass spectrometry datasets (proteomic, metabolomic/lipidomic). Not rel... |
14 | 46,185 | 53,842 | ms-fasta | provides programmatic access to fasta files |
15 | 47,160 | 72,875 | mspire-lipidomics | does lipidomics |
16 | 54,591 | 72,875 | simpler | you should check out rsruby first. This is a very low-tech way to run R. It does have... |
17 | 59,511 | 33,005 | arrayclass | low memory class based on Array |
18 | 59,722 | 20,808 | savgol | Extends Array class with method which calculates applies Savitzky-Golay filter used for... |
19 | 60,816 | 72,875 | ms-mascot | An Mspire library supporting Mascot. |
20 | 72,828 | 72,875 | ms-xcalibur | An Mspire library supporting Xcalibur. |
21 | 78,574 | 72,875 | ms-lipidomics | does ms lipidomics |
22 | 81,207 | 37,098 | mspire-sequest | reads .SRF, .SQT and supports conversions |
23 | 82,488 | 53,842 | diadem | Dynamic isotope analysis for mass spectrometry isotope experiments. Calculates and vis... |
24 | 86,494 | 72,875 | msplinter | Predicts how molecules will fragment in a mass spectrometer. Currently focused on lipi... |
25 | 90,207 | 72,875 | hydrogen_bondifier | uses pymol |
26 | 92,068 | 72,875 | ms-uniprot | ms-uniprot |
27 | 96,640 | 72,875 | ms-testdata | The data used to test the mspire libraries is often large and unwieldly. To better
su... |
28 | 96,862 | 53,842 | spec-more | very terse syntax for testing/specing ala Test::More |
29 | 100,133 | 72,875 | dotmation | ruby dsl/config to softlink dotfiles that is somewhat github aware |
30 | 100,433 | 72,875 | runarray | a pure ruby implementation of a numeric array interface. |
31 | 100,902 | 37,098 | binneroc | bins x, y data into discrete bins using constant time binning. Useful. |
32 | 104,933 | 72,875 | mspire-mascot-dat | Reads mascot dat files with gusto for mspire library. |
33 | 105,319 | 72,875 | gene_ontology | Parses gene ontology .obo files, links terms through `is_a` and provides methods to fin... |
34 | 109,489 | 72,875 | MSAbundanceSim | Simulate protein abundances given FASTA files. |
35 | 110,818 | 72,875 | mspire-obo | simplified access for obo ontology files. Builds hashes for quick lookup of terms and ... |
36 | 111,316 | 72,875 | mspire-molecular_formula | mspire library to handle molecular formulas (including an optional charge state), compl... |
37 | 115,020 | 37,098 | bivy | uses a simple YAML format to store bibliographies. Then modifies citations in openoffi... |
38 | 116,975 | 53,842 | dna_sequence_aligner | does high pairwise alignment of sequencing reads with a template using bioruby and clus... |
39 | 124,633 | 72,875 | ms-unimod | Tasks to setup and utilize a Unimod database. |
40 | 148,157 | 53,842 | mspire-isotope | mspire library holding element isotope information. Mostly just holds constants. |
41 | 148,488 | 72,875 | mspire-mass | mspire library for mass calculations. Mainly holds constants for simple lookup. |
42 | 150,392 | 72,875 | mspire-lipid | mass spectrometry based lipidomics - especially shotgun lipidomics. |