Jtprince549's Gems

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#Total RankDaily RankNameSummary
12,3613,449histogramgives objects the ability to 'histogram' in several useful ways
29,4937,261rserve-simplerinterface layered on top of rserve-client gem for interacting with R
310,68072,875mspiremass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
417,46272,875ms-sequestreads .SRF, .SQT and supports conversions
523,84872,875ms-corebasic, shared functionality for mspire libraries.
628,30172,875ms-msrunA library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an...
730,13372,875gnuplot-multiplotsimple multiplot interface to enhance the gnuplot gem
832,66672,875rubabelRuby interface to the OpenBabel ruby bindings similar to pybel
933,46472,875ms-identmspire library for working with mzIdentML, pepxml, and related.
1034,47072,875ms-in_silicopeptide fragmentation and protein digestion
1136,92825,921axmlAXML - Provides a simple, minimalistic DOM for working with data stored in an XML docum...
1244,04572,875ms-error_rateaids for creating and calculating error rates using target-decoy searches and sample va...
1344,23972,875ms-quantquantitation of mass spectrometry datasets (proteomic, metabolomic/lipidomic). Not rel...
1446,18553,842ms-fastaprovides programmatic access to fasta files
1547,16072,875mspire-lipidomicsdoes lipidomics
1654,59172,875simpleryou should check out rsruby first. This is a very low-tech way to run R. It does have...
1759,51133,005arrayclasslow memory class based on Array
1859,72220,808savgolExtends Array class with method which calculates applies Savitzky-Golay filter used for...
1960,81672,875ms-mascotAn Mspire library supporting Mascot.
2072,82872,875ms-xcaliburAn Mspire library supporting Xcalibur.
2178,57472,875ms-lipidomicsdoes ms lipidomics
2281,20737,098mspire-sequestreads .SRF, .SQT and supports conversions
2382,48853,842diademDynamic isotope analysis for mass spectrometry isotope experiments. Calculates and vis...
2486,49472,875msplinterPredicts how molecules will fragment in a mass spectrometer. Currently focused on lipi...
2590,20772,875hydrogen_bondifieruses pymol
2692,06872,875ms-uniprotms-uniprot
2796,64072,875ms-testdataThe data used to test the mspire libraries is often large and unwieldly. To better su...
2896,86253,842spec-morevery terse syntax for testing/specing ala Test::More
29100,13372,875dotmationruby dsl/config to softlink dotfiles that is somewhat github aware
30100,43372,875runarraya pure ruby implementation of a numeric array interface.
31100,90237,098binnerocbins x, y data into discrete bins using constant time binning. Useful.
32104,93372,875mspire-mascot-datReads mascot dat files with gusto for mspire library.
33105,31972,875gene_ontologyParses gene ontology .obo files, links terms through `is_a` and provides methods to fin...
34109,48972,875MSAbundanceSimSimulate protein abundances given FASTA files.
35110,81872,875mspire-obosimplified access for obo ontology files. Builds hashes for quick lookup of terms and ...
36111,31672,875mspire-molecular_formulamspire library to handle molecular formulas (including an optional charge state), compl...
37115,02037,098bivyuses a simple YAML format to store bibliographies. Then modifies citations in openoffi...
38116,97553,842dna_sequence_alignerdoes high pairwise alignment of sequencing reads with a template using bioruby and clus...
39124,63372,875ms-unimodTasks to setup and utilize a Unimod database.
40148,15753,842mspire-isotopemspire library holding element isotope information. Mostly just holds constants.
41148,48872,875mspire-massmspire library for mass calculations. Mainly holds constants for simple lookup.
42150,39272,875mspire-lipidmass spectrometry based lipidomics - especially shotgun lipidomics.