Jtprince549's Gems

#	Total Rank	Daily Rank	Name	Summary
1	2,492	3,715	histogram	gives objects the ability to 'histogram' in several useful ways
2	8,316	9,048	rserve-simpler	interface layered on top of rserve-client gem for interacting with R
3	11,252	24,669	mspire	mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
4	18,474	27,782	ms-sequest	reads .SRF, .SQT and supports conversions
5	24,842	27,782	ms-core	basic, shared functionality for mspire libraries.
6	29,311	27,782	ms-msrun	A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an...
7	32,607	41,670	gnuplot-multiplot	simple multiplot interface to enhance the gnuplot gem
8	33,687	36,321	rubabel	Ruby interface to the OpenBabel ruby bindings similar to pybel
9	34,395	41,670	ms-ident	mspire library for working with mzIdentML, pepxml, and related.
10	35,486	50,245	ms-in_silico	peptide fragmentation and protein digestion
11	38,022	91,929	axml	AXML - Provides a simple, minimalistic DOM for working with data stored in an XML docum...
12	45,226	50,245	ms-error_rate	aids for creating and calculating error rates using target-decoy searches and sample va...
13	45,591	32,635	ms-quant	quantitation of mass spectrometry datasets (proteomic, metabolomic/lipidomic). Not rel...
14	47,581	64,957	ms-fasta	provides programmatic access to fasta files
15	48,554	36,321	mspire-lipidomics	does lipidomics
16	55,811	29,947	simpler	you should check out rsruby first. This is a very low-tech way to run R. It does have...
17	57,111	64,957	savgol	Extends Array class with method which calculates applies Savitzky-Golay filter used for...
18	61,333	50,245	arrayclass	low memory class based on Array
19	61,560	64,957	ms-mascot	An Mspire library supporting Mascot.
20	74,640	64,957	ms-xcalibur	An Mspire library supporting Xcalibur.
21	80,472	145,113	ms-lipidomics	does ms lipidomics
22	81,258	36,321	mspire-sequest	reads .SRF, .SQT and supports conversions
23	84,450	41,670	diadem	Dynamic isotope analysis for mass spectrometry isotope experiments. Calculates and vis...
24	87,865	64,957	msplinter	Predicts how molecules will fragment in a mass spectrometer. Currently focused on lipi...
25	92,746	91,929	hydrogen_bondifier	uses pymol
26	94,430	145,113	ms-uniprot	ms-uniprot
27	96,881	91,929	ms-testdata	The data used to test the mspire libraries is often large and unwieldly. To better su...
28	99,018	91,929	spec-more	very terse syntax for testing/specing ala Test::More
29	100,294	91,929	runarray	a pure ruby implementation of a numeric array interface.
30	101,177	145,113	binneroc	bins x, y data into discrete bins using constant time binning. Useful.
31	102,108	41,670	dotmation	ruby dsl/config to softlink dotfiles that is somewhat github aware
32	106,697	64,957	gene_ontology	Parses gene ontology .obo files, links terms through `is_a` and provides methods to fin...
33	107,274	91,929	mspire-mascot-dat	Reads mascot dat files with gusto for mspire library.
34	108,069	41,670	MSAbundanceSim	Simulate protein abundances given FASTA files.
35	111,737	91,929	mspire-molecular_formula	mspire library to handle molecular formulas (including an optional charge state), compl...
36	112,254	145,113	mspire-obo	simplified access for obo ontology files. Builds hashes for quick lookup of terms and ...
37	119,067	50,245	dna_sequence_aligner	does high pairwise alignment of sequencing reads with a template using bioruby and clus...
38	126,698	145,113	ms-unimod	Tasks to setup and utilize a Unimod database.
39	148,375	145,113	mspire-mass	mspire library for mass calculations. Mainly holds constants for simple lookup.
40	149,900	50,245	mspire-isotope	mspire library holding element isotope information. Mostly just holds constants.
41	151,046	64,957	mspire-lipid	mass spectrometry based lipidomics - especially shotgun lipidomics.