| 1 | 2,555 | 3,168 | histogram | gives objects the ability to 'histogram' in several useful ways |
| 2 | 8,444 | 14,121 | rserve-simpler | interface layered on top of rserve-client gem for interacting with R |
| 3 | 11,652 | 7,780 | mspire | mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms... |
| 4 | 19,085 | 19,862 | ms-sequest | reads .SRF, .SQT and supports conversions |
| 5 | 25,530 | 26,848 | ms-core | basic, shared functionality for mspire libraries. |
| 6 | 30,030 | 29,667 | ms-msrun | A library for working with LC/MS runs. Part of mspire. Has parsers for mzXML v1, 2, an... |
| 7 | 33,833 | 106,124 | gnuplot-multiplot | simple multiplot interface to enhance the gnuplot gem |
| 8 | 34,284 | 29,667 | rubabel | Ruby interface to the OpenBabel ruby bindings similar to pybel |
| 9 | 35,244 | 33,451 | ms-ident | mspire library for working with mzIdentML, pepxml, and related. |
| 10 | 36,397 | 35,780 | ms-in_silico | peptide fragmentation and protein digestion |
| 11 | 38,717 | 29,667 | axml | AXML - Provides a simple, minimalistic DOM for working with data stored in an XML docum... |
| 12 | 46,250 | 52,183 | ms-error_rate | aids for creating and calculating error rates using target-decoy searches and sample va... |
| 13 | 46,557 | 42,164 | ms-quant | quantitation of mass spectrometry datasets (proteomic, metabolomic/lipidomic). Not rel... |
| 14 | 48,576 | 46,492 | ms-fasta | provides programmatic access to fasta files |
| 15 | 49,630 | 46,492 | mspire-lipidomics | does lipidomics |
| 16 | 56,858 | 52,183 | simpler | you should check out rsruby first. This is a very low-tech way to run R. It does have... |
| 17 | 58,041 | 70,356 | savgol | Extends Array class with method which calculates applies Savitzky-Golay filter used for... |
| 18 | 62,333 | 46,492 | arrayclass | low memory class based on Array |
| 19 | 62,708 | 59,868 | ms-mascot | An Mspire library supporting Mascot. |
| 20 | 76,000 | 70,356 | ms-xcalibur | An Mspire library supporting Xcalibur. |
| 21 | 81,978 | 84,476 | ms-lipidomics | does ms lipidomics |
| 22 | 82,055 | 70,356 | mspire-sequest | reads .SRF, .SQT and supports conversions |
| 23 | 85,719 | 84,476 | diadem | Dynamic isotope analysis for mass spectrometry isotope experiments. Calculates and vis... |
| 24 | 88,880 | 70,356 | msplinter | Predicts how molecules will fragment in a mass spectrometer. Currently focused on lipi... |
| 25 | 94,179 | 84,476 | hydrogen_bondifier | uses pymol |
| 26 | 96,123 | 84,476 | ms-uniprot | ms-uniprot |
| 27 | 97,721 | 84,476 | ms-testdata | The data used to test the mspire libraries is often large and unwieldly. To better
su... |
| 28 | 99,964 | 70,356 | spec-more | very terse syntax for testing/specing ala Test::More |
| 29 | 101,261 | 84,476 | runarray | a pure ruby implementation of a numeric array interface. |
| 30 | 101,468 | 84,476 | binneroc | bins x, y data into discrete bins using constant time binning. Useful. |
| 31 | 103,567 | 106,124 | dotmation | ruby dsl/config to softlink dotfiles that is somewhat github aware |
| 32 | 108,167 | 84,476 | gene_ontology | Parses gene ontology .obo files, links terms through `is_a` and provides methods to fin... |
| 33 | 108,781 | 84,476 | MSAbundanceSim | Simulate protein abundances given FASTA files. |
| 34 | 108,853 | 84,476 | mspire-mascot-dat | Reads mascot dat files with gusto for mspire library. |
| 35 | 112,988 | 84,476 | mspire-molecular_formula | mspire library to handle molecular formulas (including an optional charge state), compl... |
| 36 | 113,295 | 84,476 | mspire-obo | simplified access for obo ontology files. Builds hashes for quick lookup of terms and ... |
| 37 | 120,728 | 106,124 | dna_sequence_aligner | does high pairwise alignment of sequencing reads with a template using bioruby and clus... |
| 38 | 128,886 | 106,124 | ms-unimod | Tasks to setup and utilize a Unimod database. |
| 39 | 150,089 | 106,124 | mspire-mass | mspire library for mass calculations. Mainly holds constants for simple lookup. |
| 40 | 151,590 | 106,124 | mspire-isotope | mspire library holding element isotope information. Mostly just holds constants. |
| 41 | 152,732 | 106,124 | mspire-lipid | mass spectrometry based lipidomics - especially shotgun lipidomics. |
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